Configuration#

This document describes the TOML format used by the Translator.from_config()-method.

Hint

Functions or classes are resolved by name using rics.misc.get_by_full_name().

Unqualified names are assumed to belong to an appropriate id_translation module. To specify a custom implementation, use 'fully.qualified.names' (in quotation marks).

Meta configuration#

The metaconf.toml-file must be placed next to the main TOML configuration file, and determines how other files are processed by the factory. See Metaconf for internal representation.

The `metaconf.toml` file format.#
Top-level section	Type	Description
`[env]`	`EnvConf`	Control environment-variable interpolation; `${VAR}` or `${VAR:default}`.
`[equivalence]`	`EquivalenceConf`	Determines how equivalence between configuration files is determined.

The metaconf.toml-file is read as-is, without any preprocessing.

Sections#

The only valid top-level keys are translator, unknown_ids, and fetching. Only the fetching section is required, though it may be left out of the main configuration file if fetching is configured separately. Other top-level keys will raise a ConfigurationError if present.

Section: Translator#

Section keys: `[translator]`#
Key	Type	Description
fmt	`Format`	Specify how translated IDs are displayed.
enable_uuid_heuristics	`bool`	Improves matching when `UUID`-like IDs are in use.

Parameters for Name-to-source mapping are specified in a [translator.mapping]-subsection. See: Subsection: Mapping for details (context = source).

Section: Unknown IDs#

Section keys: `[unknown_ids]`#
Key	Type	Description	Comments
fmt	`Format`	Specify a format for untranslated IDs.	Can be a plain string `fmt='Unknown'`, or `fmt='{id}'` to leave as-is.

Alternative placeholder-values for unknown IDs can be declared in a [unknown_ids.overrides]-subsection. See: Subsection: Overrides for details (context = source).

Section: Transformations#

You may specify one Transformer per source. Subsection keys are passed directly to the init-method of the chosen transformer type. For available transformers, see id_translation.transform.

Note

You may add [transform.'<source>']-sections either in the main configuration file, or in an auxiliary fetcher configuration. It is a ConfigurationError to specify transformations for the same source more than once.

For example, to configure a BitmaskTransformer, add a section on the form [transform.'<source>'.BitmaskTransformer] to an appropriate configuration file:

[transform.'<source>'.BitmaskTransformer]
joiner = " AND "
overrides = [
    { id = 0, override = "NOT_SET" },
    { id = 0b1000, override = "OVERFLOW" },
]

This will create a transform that formats bitmasks such as 0b101 in the following way:

translator.translate((0b000, 0b101, 8), name="<source>")
("NOT_SET", "1:name-of-1 AND 4:name-of-4", "OVERFLOW")

Hint

Custom transformers may be initialized by using sections with fully qualified type names.

For example, a [transform.'<source>'.'my.library.SuperTransformer']-section would import and initialize a SuperTransformer from the my.library module.

Section: Fetching#

The type of the fetcher is determined by the second-level key (other than mapping, which is reserved). For example, a MemoryFetcher would be created by adding a [fetching.MemoryFetcher]-section.

Section keys: `[fetching]`#
Key	Type	Description	Comments
allow_fetch_all	`bool`	Control access to `fetch_all()`.	Some fetchers types redefine or ignore this key.
selective_fetch_all	`bool`	Sources without required keys are are not fetched.
identifiers	`Sequence[str]`	Hierarchical identifiers for the fetcher.	Based on source file if not given.
optional	`bool`	If `True`, discard on `sources`-resolution crash.	Multi-fetcher mode only. See Optional fetchers for details.
cache	`CacheAccess` subtype	User-defined caching implementation.	Keyword `type` required. See Caching for details.

The keys listed above are for the AbstractFetcher class, which all fetchers created by TOML configuration must inherit. Additional parameters vary based on the chosen implementation. See the id_translation.fetching module for choices.

The AbstractFetcher uses a a Mapper to bind actual placeholder names in sources to desired placeholder names requested by the calling Translator instance. See: Subsection: Mapping for details. For all mapping operations performed by the AbstractFetcher, context = source.

Hint

Custom fetchers may be initialized by using sections with fully qualified type names in single quotation marks. For example, a [fetching.'my.library.SuperFetcher']-section would import and initialize a SuperFetcher from the my.library module.

Under the hood, this will call get_by_full_name() using name="my.library.SuperFetcher".

Optional fetchers#

Optional fetchers are allowed to raise when Fetcher.initialize_sources() is called. Fetchers should not raise when imported or initialized. To suppress init errors (e.g. ModuleNotFoundError), the config file must specify optional = true in the class init args:

[fetching."my_module.MyFetcher"]
optional = true

The ID_TRANSLATION_SUPPRESS_OPTIONAL_FETCHER_INIT_ERRORS variable must also be true. The TranslatorFactory will always use the ERROR level for fetchers that are discarded this way.

Warning

Using ID_TRANSLATION_SUPPRESS_OPTIONAL_FETCHER_INIT_ERRORS=true can and often will hide configuration errors (e.g. misspelled argument names) or broken packages.

Fetchers should be designed so that they do not raise before Fetcher.initialize_sources() is called.

Caching#

This library does not provide any caching implementations.

Instead, users may implement the CacheAccess interface to define their own caching logic. The AbstractFetcher will then call CacheAccess.load() and CacheAccess.store() when appropriate.

Multiple fetchers#

Complex applications may require multiple fetchers. These may be specified in auxiliary config files, one fetcher per file. Only the fetching key will be considered in these files. If multiple fetchers are defined, a MultiFetcher is created. Fetchers defined this way are hierarchical. The input order determines rank, affecting Name-to-source mapping. For example, for a Translator created by running

>>> from id_translation import Translator
>>> extra_fetchers=["primary-fetcher.toml", "secondary-fetcher.toml"]
>>> Translator.from_config("translation.toml", extra_fetchers=extra_fetchers)

the Translator.map-function will first consider the sources of the fetcher defined in translation.toml (if there is one), then primary-fetcher.toml and finally secondary-fetcher.toml.

Section keys: `[fetching.MultiFetcher]` (main config only)#
Key	Type	Description
max_workers	`int`	Maximum number of individual child fetchers to call in parallel.
on_source_conflict	raise \| warn \| ignore	Action for disputes during `source discovery`.
fetcher_discarded_log_level	`int \| str`	Discarding of `optional` fetchers that fail (e.g. raise) during `source discovery`.

The [fetching.MultiFetcher] section is permitted only in the main configuration file.

Subsection: Mapping#

For more information about the mapping procedure, please refer to the Mapping primer page.

Section keys: `[*.mapping]`#
Key	Type	Description	Comments
score_function	`ScoreFunction`	Compute value/candidate-likeness	See built-in `score_functions`.
on_unmapped	raise \| warn \| ignore	Handle unmatched values.
cardinality	`Cardinality`	Determine how many candidates to map a single value to.	E.g. ‘1:1’ or ‘N:1’.

Score functions which take additional keyword arguments should be specified in a child section, eg [*.mapping.<score-function-name>]. See: id_translation.mapping.score_functions for options.
External functions may be used by putting fully qualified names in single quotation marks. Names which do not contain any dot characters ('.') are assumed to refer to functions in the appropriate id_translation.mapping submodule.

Hint

For difficult matches, consider using overrides instead.

Filter functions#

Filters are given in [[*.mapping.filter_functions]] list-subsections. These may be used to remove undesirable matches, for example SQL tables which should not be used or a DataFrame column that should not be translated.

Section keys: `[[*.mapping.filter_functions]]`#
Key	Type	Description	Comments
function	`str`	Function name.	See built-in `filter_functions`.

Note

Additional keys depend on the chosen function implementation.

As an example, the next snippet ensures that only names ending with an '_id'-suffix will be translated by using a filter_names()-filter.

[[translator.mapping.filter_functions]]
function = "filter_names"
regex = ".*_id$"
remove = false  # This is the default (like the See built-in filter).

Score function#

There are some ScoreFunction s which take additional keyword arguments. These must be declared in a [*.<score-function-name>]-subsection. Example:

Arguments for modified_hamming() a scorer.#

[translator.mapping.score_function.modified_hamming]
add_length_ratio_term = false

See id_translation.mapping.score_functions for options.

Score function heuristics#

Heuristics may be used to aid an underlying score_function to make more difficult matches. There are two types of heuristic functions: AliasFunction s and Short-circuiting functions (which are really just differently interpreted FilterFunction s).

Heuristics are given in [[*.mapping.score_function_heuristics]] list-subsections (note the double brackets) and are applied in the order in which they are given by the HeuristicScore wrapper class.

Section keys: `[[*.mapping.score_function_heuristics]]`#
Key	Type	Description	Comments
function	`str`	Function name.	See built-in `heuristic_functions`.
mutate	`bool`	Keep changes made by function.	Disabled by default.

Note

Additional keys depend on the chosen function implementation.

As an example, the next snippet lets us match table columns such as animal_id to the id placeholder by using a value_fstring_alias() heuristic.

[[fetching.mapping.score_function_heuristics]]
function = "value_fstring_alias"
fstring = "{context}_{value}"

Hint

For difficult matches, consider using overrides instead.

Subsection: Overrides#

Shared or context-specific key-value pairs implemented by the InheritedKeysDict class. When used in config files, these appear as [*.overrides]-sections. Top-level override items are given in the [*.overrides]-section, while context-specific items are specified using a subsection, eg [*.overrides.<context-name>].

Note

The type of context is determined by the class that owns the overrides.

This next snippet is from another example. For unknown IDs, the name is set to ‘Name unknown’ for the ‘name_basics’ source and ‘Title unknown’ for the ‘title_basics’ source, respectively. They both inherit the from and to keys which are set to ‘?’.

[unknown_ids.overrides]
from = "?"
to = "?"

[unknown_ids.overrides.name_basics]
name = "Name unknown"
[unknown_ids.overrides.title_basics]
name = "Title unknown"

Warning

Overrides have no fixed keys. No validation is performed and errors may be silent. The mapping process provides detailed information in debug mode, which may be used to discover issues.

Hint

Overrides may also be used to prevent mapping certain values.

Preventing unwanted mappings#

For example, let’s assume that a SQL source table called title_basics with two columns title and name with identical contents. We would like to use a format '[{title}. ]{name}' to output translations such as ‘Mr. Astaire’. To avoid output such as ‘Top Hat. Top Hat’ for movies, we may add

[fetching.mapping.overrides.movies]
title = "_"

to force the fetcher to inform the Translator that the title placeholder (column) does not exist for the title_basics source (we used ‘_’ since TOML does not have a null-type).

Custom TOML initialization#

All TOML configuration is interpreted by the TranslatorFactory class. To customize how different components are created, overwrite the all-caps factory properties of this class. For example, you may overwrite the TranslatorFactory.FETCHER_FACTORY attribute with your own implementation to customize how fetcher instances are created.

If your use case is not covered, consider opening an issue in the repository: rsundqvist/id-translation#issues